Connect Emerging Assemblies in Triticeae by Genes
Species Assemblies Coding Genes Collinear Blocks
14 62 4.3M 12.0M
If use TGT in pulication, please cite:
Yongming Chen, Wanjun Song, Xiaoming Xie, Zihao Wang, Panfeng Guan, Huiru Peng, Yuannian Jiao, Zhongfu Ni, Qixin Sun, and Weilong Guo. (2020) A Collinearity-incorporating Homology Inference Strategy for Connecting Emerging Assemblies in Triticeae Tribe as a Pilot Practice in the Plant Pangenomic Era. Molecular Plant, 13, 1694–1708.

News
  • Jul. 24, 2021   New genome: wheat Fielder genome annotation

  • Jul. 10, 2021   New genome: barley Morex v3 genome annotation

  • Jun. 1, 2021   New genome: Aegilops tauschii pangenome genome annotation

  • May. 11, 2021   New genome: oat v2 genome annotation

  • Apr. 30, 2021   New genome: IWGSC RefSeqv2.1 genome annotation

  • Mar. 28, 2021   New annotation page is now availity, and the "MicroCollinearity" has been updated

  • Mar. 21, 2021   New genome: rye genome annotation

  • Jan. 29, 2021   New genome: barley pangenome project genome annotation

  • Dec. 27, 2020   The "MicroCollinearity" has been updated

  • Nov. 26, 2020   New genome: 10+ genome project genome annotation

  • Oct. 12, 2020   New genome: Triticum urartu ASM34745v1 and Brachypodium distachyon IBI v3.0 genome annotation

  • Oct. 8, 2020   New genome: the Tibetan wheat Zang1817 genome annotation

  • Sep. 23, 2020   Cheers! The paper is published in Molecular Plant

  • Aug. 5, 2020   The "By Symbol Name", which can search gene of Triticeae by well-stueied gene of rice, maize, and Arabidopsis, is now available

  • May. 7, 2020   The "MacroCollinearity", which can show collinearity in macro-region, is now available

  • Apr. 15, 2020   The "MicroCollinearity", which can show collinearity in micro-region, is now available

  • Nov. 6, 2019   The "GeneDescription", which can search function annotation and position, is now available

  • Aug. 9, 2019   Triticeae-GeneTribe (TGT) database is now open

Homologues

Homologues

Gene Description

GeneDescription
GeneDescription

Gene Ontology

GOEnrichment

Gene Pair

GenePair

MacroCollinearity

MacroCollinearity

MicroCollinearity

MicroCollinearity
 
Currently available reference genomes and annotations
⑥  ⑤  ④  ③  ②  ① Species Genomes Varieties Annotation Versions Genes References
Triticum aestivum BBAADD Chinese Spring IWGSC RefSeqv1.1 107,891 IWGSC, 2018
Triticum aestivum BBAADD Chinese Spring IWGSC RefSeqv1.0 107,891 IWGSC, 2018
Triticum aestivum BBAADD Chinese Spring IWGSC RefSeqv2.1 106,913 Zhu et al., 2021
Triticum aestivum BBAADD Chinese Spring IWGSC CSS 100,344 IWGSC, 2014
Triticum aestivum BBAADD Chinese Spring TGAC v1 104,091 Clavijo et al., 2017
Triticum aestivum BBAADD Tibetan Semi-wild wheat Zang1817 Zang1817 107,336 Guo et al., 2020
Triticum aestivum BBAADD Fielder Fielder 116,480 Sato et al., 2021
Triticum aestivum BBAADD Julius 10+Genome Julius 115,552 Walkowiak et al., 2020
Triticum aestivum BBAADD CDC Landmark 10+Genome CDC Landmark 115,515 Walkowiak et al., 2020
Triticum aestivum BBAADD Jagger 10+Genome Jagger 115,873 Walkowiak et al., 2020
Triticum aestivum BBAADD ArinaLrFor 10+Genome ArinaLrFor 117,569 Walkowiak et al., 2020
Triticum aestivum BBAADD CDC Stanley 10+Genome CDC Stanley 115,781 Walkowiak et al., 2020
Triticum aestivum BBAADD SY Mattis 10+Genome SY Mattis 117,276 Walkowiak et al., 2020
Triticum aestivum BBAADD LongReach Lancer 10+Genome LongReach Lancer 116,473 Walkowiak et al., 2020
Triticum aestivum BBAADD Mace 10+Genome Mace 116,367 Walkowiak et al., 2020
Triticum aestivum BBAADD Norin61 10+Genome Norin61 116,106 Walkowiak et al., 2020
Triticum spelta BBAADD PI190962 10+Genome PI190962 116,395 Walkowiak et al., 2020
Triticum aestivum BBAADD Cadenza 10+Genome Cadenza 122,839 Walkowiak et al., 2020
Triticum aestivum BBAADD Claire 10+Genome Claire 121,770 Walkowiak et al., 2020
Triticum aestivum BBAADD Paragon 10+Genome Paragon 121,570 Walkowiak et al., 2020
Triticum aestivum BBAADD Robigus 10+Genome Robigus 121,526 Walkowiak et al., 2020
Triticum aestivum BBAADD Weebill 10+Genome Weebill 122,647 Walkowiak et al., 2020
Triticum turgidum BBAA Svevo Svevo v1 66,559 Maccaferri et al., 2019
Triticum dicoccoides BBAA Zavitan WEWSeq v1.0 65,012 Avni et al., 2017
Triticum urartu AA G1812 Tu 2.0 37,516 Ling et al., 2017
Triticum urartu AA G1812 ASM34745v1 34,903 Ling et al., 2013
Aegilops tauschii DD AL8/78 Aet v4.0 39,622 Luo et al., 2017
Aegilops tauschii DD AL8/78 ASM34733v2 42,828 Zhao et al., 2017
Aegilops tauschii DD AY17 AY17 43,730 Zhou et al., 2021
Aegilops tauschii DD AY61 AY61 44,513 Zhou et al., 2021
Aegilops tauschii DD T093 T093 44,419 Zhou et al., 2021
Aegilops tauschii DD XJ02 XJ02 43,902 Zhou et al., 2021
Secale cere RR Weining Weining v1 43,928 Li et al., 2021
Secale cere RR Lo7 Lo7 34,441 Rabanus-Wallace et al., 2021
Thinopyrum elongatum EE PI531718 SDAU v1 44,474 Wang et al., 2020
Hordeum vulgare HH Morex IBSC v2 39,734 Mascher et al., 2017
Hordeum vulgare HH Morex Morex v3 35,827 Mascher et al., 2021
Hordeum vulgare HH Morex Pangenome Morex 49,281 Jayakodi et al., 2020
Hordeum vulgare HH Akashinriki Pangenome Akashinriki 47,159 Jayakodi et al., 2020
Hordeum vulgare HH B1K-04-12 Pangenome B1K-04-12 47,587 Jayakodi et al., 2020
Hordeum vulgare HH Barke Pangenome Barke 48,212 Jayakodi et al., 2020
Hordeum vulgare HH Golden Promise Pangenome Golden Promise 45,084 Jayakodi et al., 2020
Hordeum vulgare HH Hockett Pangenome Hockett 48,779 Jayakodi et al., 2020
Hordeum vulgare HH HOR10350 Pangenome HOR10350 48,007 Jayakodi et al., 2020
Hordeum vulgare HH HOR13821 Pangenome HOR13821 47,178 Jayakodi et al., 2020
Hordeum vulgare HH HOR13942 Pangenome HOR13942 47,257 Jayakodi et al., 2020
Hordeum vulgare HH HOR21599 Pangenome HOR21599 47,080 Jayakodi et al., 2020
Hordeum vulgare HH HOR3081 Pangenome HOR3081 47,599 Jayakodi et al., 2020
Hordeum vulgare HH HOR3365 Pangenome HOR3365 50,032 Jayakodi et al., 2020
Hordeum vulgare HH HOR7552 Pangenome HOR7552 47,337 Jayakodi et al., 2020
Hordeum vulgare HH HOR8148 Pangenome HOR8148 47,461 Jayakodi et al., 2020
Hordeum vulgare HH HOR9043 Pangenome HOR9043 47,395 Jayakodi et al., 2020
Hordeum vulgare HH Igri Pangenome Igri 47,608 Jayakodi et al., 2020
Hordeum vulgare HH OUN333 Pangenome OUN333 47,277 Jayakodi et al., 2020
Hordeum vulgare HH RGT Planet Pangenome RGT Planet 47,743 Jayakodi et al., 2020
Hordeum vulgare HH ZDM01467 Pangenome ZDM01467 47,408 Jayakodi et al., 2020
Hordeum vulgare HH ZDM02064 Pangenome ZDM02064 47,794 Jayakodi et al., 2020
Avena strigosa NN S75 OAT v2 39,885 Li et al., 2021
Brachypodium distachyon NN Bd21 IBI v3.0 34,310 IBI, 2010
Oryza sativa Japonica NN Nipponbare IRGSP 1.0 37,960 IRGSP, 2005
Zea mays NN B73 B73 RefGen v4 39,591 Schnable et al., 2009
Arabidopsis thaliana NN Columbia TAIR10 27,655 AGI, 2000
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