TriticeaeGeneTribe - A homology database for Triticeae tribe (wheat, durum wheat, barley, and their relatives)

Connect Emerging Assemblies in Triticeae by Genes

Species	Assemblies	Coding Genes	Collinear Blocks
11	52	3.8M	11.6M

News

Jan. 29, 2021 New genome: barley pan-genome project genome annotation
Dec. 27, 2020 The "MicroCollinearity" has been updated
Nov. 26, 2020 New genome: 10+ genome project genome annotation
Oct. 12, 2020 New genome: Triticum urartu ASM34745v1 and Brachypodium distachyon IBI v3.0 genome annotation
Oct. 8, 2020 New genome: the Tibetan wheat Zang1817 genome annotation
Sep. 23, 2020 Cheers! The paper is published in Molecular Plant
Aug. 5, 2020 The "By Symbol Name", which can search gene of Triticeae by well-stueied gene of rice, maize, and Arabidopsis, is now available
May. 7, 2020 The "MacroCollinearity", which can show collinearity in macro-region, is now available
Apr. 15, 2020 The "MicroCollinearity", which can show collinearity in micro-region, is now available
Nov. 6, 2019 The "GeneDescription", which can search function annotation and position, is now available
Aug. 9, 2019 Triticeae-GeneTribe (TGT) database is now open

Homologues

Gene Description

Gene Ontology

Gene Pair

MacroCollinearity

MircoCollinearity

Citation

Yongming Chen, Wanjun Song, Xiaoming Xie, Zihao Wang, Panfeng Guan, Huiru Peng, Yuannian Jiao, Zhongfu Ni, Qixin Sun, and Weilong Guo. (2020) A Collinearity-incorporating Homology Inference Strategy for Connecting Emerging Assemblies in Triticeae Tribe as a Pilot Practice in the Plant Pangenomic Era. Molecular Plant, 13, 1694–1708. doi:10.1016/j.molp.2020.09.019


Currently available reference genomes and annotations
⑥ ⑤ ④ ③ ② ①	Species	Varieties	Annotation Versions	Genes	Genomes	References
	Triticum aestivum	Chinese Spring	IWGSC RefSeqv1.1	107,891	BBAADD	IWGSC et al., 2018
	Triticum aestivum	Chinese Spring	IWGSC RefSeqv1.0	107,891	BBAADD	IWGSC et al., 2018
	Triticum aestivum	Chinese Spring	IWGSC CSS	100,344	BBAADD	Mayer et al., 2014
	Triticum aestivum	Chinese Spring	TGAC v1	104,091	BBAADD	Clavijo et al., 2017
	Triticum aestivum	Tibetan Semi-wild wheat Zang1817	Zang1817	107,336	BBAADD	Guo et al., 2020
	Triticum aestivum	Julius	10+Genome Julius	115,552	BBAADD	Walkowiak et al., 2020
	Triticum aestivum	CDC Landmark	10+Genome CDC Landmark	115,515	BBAADD	Walkowiak et al., 2020
	Triticum aestivum	Jagger	10+Genome Jagger	115,873	BBAADD	Walkowiak et al., 2020
	Triticum aestivum	ArinaLrFor	10+Genome ArinaLrFor	117,569	BBAADD	Walkowiak et al., 2020
	Triticum aestivum	CDC ArinaLrFor	10+Genome CDC Stanley	115,781	BBAADD	Walkowiak et al., 2020
	Triticum aestivum	SY Mattis	10+Genome SY Mattis	117,276	BBAADD	Walkowiak et al., 2020
	Triticum aestivum	LongReach Lancer	10+Genome LongReach Lancer	116,473	BBAADD	Walkowiak et al., 2020
	Triticum aestivum	Mace	10+Genome Mace	116,367	BBAADD	Walkowiak et al., 2020
	Triticum aestivum	Norin61	10+Genome Norin61	116,106	BBAADD	Walkowiak et al., 2020
	Triticum spelta	PI190962	10+Genome PI190962	116,395	BBAADD	Walkowiak et al., 2020
	Triticum aestivum	Cadenza	10+Genome Cadenza	122,839	BBAADD	Walkowiak et al., 2020
	Triticum aestivum	Claire	10+Genome Claire	121,770	BBAADD	Walkowiak et al., 2020
	Triticum aestivum	Paragon	10+Genome Paragon	121,570	BBAADD	Walkowiak et al., 2020
	Triticum aestivum	Robigus	10+Genome Robigus	121,526	BBAADD	Walkowiak et al., 2020
	Triticum aestivum	Weebill	10+Genome Weebill	122,647	BBAADD	Walkowiak et al., 2020
	Triticum turgidum	Svevo	Svevo v1	66,559	BBAA	Maccaferri et al., 2019
	Triticum dicoccoides	Zavitan	WEWSeq v1.0	65,012	BBAA	Avni et al., 2017
	Triticum urartu	G1812	Tu 2.0	37,516	AA	Ling et al., 2017
	Triticum urartu	G1812	ASM34745v1	34,903	AA	Ling et al., 2013
	Aegilops tauschii	AL8/78	Aet v4.0	39,622	DD	Luo et al., 2017
	Aegilops tauschii	AL8/78	ASM34733v2	42,828	DD	Zhao et al., 2017
	Thinopyrum elongatum	PI531718	SDAU v1	44,474	EE	Wang et al., 2020
	Hordeum vulgare	Morex	IBSC v2	39,734	HH	Martin et al., 2017
	Hordeum vulgare	Morex	Pangenome Morex	49,281	HH	Jayakodi et al., 2020
	Hordeum vulgare	Akashinriki	Pangenome Akashinriki	47,159	HH	Jayakodi et al., 2020
	Hordeum vulgare	B1K-04-12	Pangenome B1K-04-12	47,587	HH	Jayakodi et al., 2020
	Hordeum vulgare	Barke	Pangenome Barke	48,212	HH	Jayakodi et al., 2020
	Hordeum vulgare	Golden Promise	Pangenome Golden Promise	45,084	HH	Jayakodi et al., 2020
	Hordeum vulgare	Hockett	Pangenome Hockett	48,779	HH	Jayakodi et al., 2020
	Hordeum vulgare	HOR10350	Pangenome HOR10350	48,007	HH	Jayakodi et al., 2020
	Hordeum vulgare	HOR13821	Pangenome HOR13821	47,178	HH	Jayakodi et al., 2020
	Hordeum vulgare	HOR13942	Pangenome HOR13942	47,257	HH	Jayakodi et al., 2020
	Hordeum vulgare	HOR21599	Pangenome HOR21599	47,080	HH	Jayakodi et al., 2020
	Hordeum vulgare	HOR3081	Pangenome HOR3081	47,599	HH	Jayakodi et al., 2020
	Hordeum vulgare	HOR3365	Pangenome HOR3365	50,032	HH	Jayakodi et al., 2020
	Hordeum vulgare	HOR7552	Pangenome HOR7552	47,337	HH	Jayakodi et al., 2020
	Hordeum vulgare	HOR8148	Pangenome HOR8148	47,461	HH	Jayakodi et al., 2020
	Hordeum vulgare	HOR9043	Pangenome HOR9043	47,395	HH	Jayakodi et al., 2020
	Hordeum vulgare	Igri	Pangenome Igri	47,608	HH	Jayakodi et al., 2020
	Hordeum vulgare	OUN333	Pangenome OUN333	47,277	HH	Jayakodi et al., 2020
	Hordeum vulgare	RGT Planet	Pangenome RGT Planet	47,743	HH	Jayakodi et al., 2020
	Hordeum vulgare	ZDM01467	Pangenome ZDM01467	47,408	HH	Jayakodi et al., 2020
	Hordeum vulgare	ZDM02064	Pangenome ZDM02064	47,794	HH	Jayakodi et al., 2020
	Brachypodium distachyon	Bd21	IBI v3.0	34,310	NN	IBI, 2010
	Oryza sativa Japonica	Nipponbare	IRGSP 1.0	37,960	NN	Matsumoto et al., 2005
	Zea mays	B73	B73 RefGen v4	39,591	NN	Patrick et al., 2009
	Arabidopsis thaliana	Columbia	TAIR10	27,655	NN	Kaul et al., 2000
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