TriticeaeGeneTribe - A homology database for Triticeae tribe (wheat, durum wheat, barley, and their relatives)

1. Select assembly

2. Enter gene list

Paste a list

Or upload file

Browse...

3. Select task

1-to-1 1-to-many

Min match score

4. Search to following assemblies

Download results as CSV

Real branch length

Show gene structure

Download proteins sequance

Show genes ID

1. Select assembly

2. Enter gene list

Paste a gene list

Or upload file

Browse...

3. 4. Download results as CSV

1. Select species

Oryza sativa Japonica (IRGSP 1.0)

Zea mays (B73 RefGen v4)

Arabidopsis thaliana (TAIR10)

Triticum aestivum (IWGSC RefSeqv1.1)

2. Enter keyword

Precise search

Case-sensitive

3. Search to following assembly

4. 5. Download results as CSV

1. Select species

2. Select task

Single sample analysis

Multiple samples analysis

Enter foreground gene list

Paste a gene list

Or upload file

Browse...

Upload a file contaioning foreground genes Example

Browse...

3. Enter customized background genes (optional)

Browse...

4. Parameter control (optional)

Significance value

Multi-test adjustment

Min size of genes in background

Max size of genes in background

Download results as CSV

Select group

1. Select assembly

2. Enter a gene

3. Define distance

4. Select second assembly

5. Select second gene

6. Plot options (optional)

one-to-many

Distinguish score

1. Select first assembly

Select chromosomes of first assembly

2 Select second assembly

Select chromosomes of second assembly

3. Mark region? (optional)

3.1 Enter a gene

Define distance

3.2. Or enter region
Example:chr1A:20000000-23000000

4. one-to-its-best block

Yes No

5.

1. Select first assembly

2. Select other assemblies

3.1. Enter a gene

Define distance

3.2. Or define region (optional)

4. Plot options (optional)

one-to-many

Distinguish score

Gene spacing

Real spacing

Species tree

Gene ID

Gene length

LC gene

You can download homologous gene tables derived from three data structures, including 1-to-1 (RBH and SBH), 1-to-many, and Singleton.

Select assembly

Select table

Download

1. Select assembly

2. Enter gene list example

Paste a list

Or upload file

3. Select task

Min match score

4. Search to following assemblies

Visualization of Multiple Sequence Alignment

1. Select assembly

2. Enter gene list example

Paste a gene list

Or upload file

3. GO

4. Download results as CSV

1. Select species

2. Enter keyword example

3. Search to following assembly

4. GO

5. Download results as CSV

1. Select species

2. Select task

Enter foreground gene list example

Paste a gene list

Or upload file

Upload a file contaioning foreground genes Example

3. Enter customized background genes (optional)

4. Parameter control (optional)

Significance value

Multi-test adjustment

Min size of genes in background

Max size of genes in background

5. Use orthologs (optional)

Select group

1. Select assembly

2. Enter a gene example

3. Define distance

4. Select second assembly

5. Select second gene

6. Plot options (optional)

1. Select first assembly example

2 Select second assembly

3. Mark region? (optional)

3.1 Enter a gene

Define distance

3.2. Or enter region Example:chr1A:20000000-23000000

4. one-to-its-best block

5. GO Download image

1. Select first assembly

2. Select other assemblies

Select genomes

3.1. Enter a gene example

Define distance

3.2. Or define region (optional)

4. Plot options (optional)

2. Enter gene list

2. Enter gene list

3.

2. Enter keyword

4.

Enter foreground gene list

2. Enter a gene

1. Select first assembly

3.2. Or enter region
Example:chr1A:20000000-23000000

5.

3.1. Enter a gene