SnpHub

About this dataset

This database contains 2 hexaploid wheat accessions: LiangXing99 and JiMai22.

Citations

If you use this data, please cite:
YANG Zheng-Zhao, WANG Zi-Hao, HU Zhao-Rong, XIN Ming-Ming, YAO Ying-Yin, PENG Hui-Ru, YOU Ming-Shan, SU Zhen-Qi, GUO Wei-Long. (2020). Comparative analysis of the genomic sequences between commercial wheat varieties Jimai 22 and Liangxing 99. Acta Agronomica Sinica, 46(12): 1870-1883.
http://zwxb.chinacrops.org/CN/10.3724/SP.J.1006.2020.01009


If you use SnpHub, please cite:
Wenxi Wang, Zihao Wang, Xintong Li, Zhongfu Ni, Zhaorong Hu, Mingming Xin, Huiru Peng, Yingyin Yao, Qixin Sun, Weilong Guo. (2020). SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat. GigaScience, 9(6), giaa060. https://doi.org/10.1093/gigascience/giaa060

About SnpHub

SnpHub, a Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.

SnpHub homepage

SnpHub manual


Avaliable samples


Avaliable chromosomes


Pre-defined sample groups

Other system informations

Use #ALL for all samples Use #GroupName to use pre-defined groups as samples

Download raw results as CSV Download genotype in nucleotide as CSV

            

            

Results

Ex: Group1{Sample1,Sample2},Group2{Sample3,Sample4}

            

            

Ex: Group1{Sample1,Sample2},Group2{Sample3,Sample4}

            

            

Use #RAW for raw reference genome sequence. Use #GroupName to use pre-defined groups as samples
Download as fasta

            

            

Consensus sequence(s)