小麦基因组变异联合数据库

数据集说明

本数据集包含了2019年以来发表的共1769份六倍体小麦（来源见下表）重测序数据。测序结果被比对到IWGSC RefSeq v1.0（中国春）参考基因组上，并采用IWGSC RefSeq v1.1进行注释。所包含样本的具体信息请见“数据集信息”页面。

六倍体样本数量	文献引用	通讯作者	通讯作者单位
758	Albert W. Schulthess, et al. Genomics-informed prebreeding unlocks the diversity in genebanks for wheat improvement. Nature Genetics, 2022, 54, 1544-1552.	Jochen C. Reif Martin Mascher	IPK, Germany
330	Jianqing Niu, et al. Whole-genome sequencing of diverse wheat accessions uncovers genetic changes during modern breeding in China and the United States. The Plant Cell, 2023, 35(12):4199-4216.	凌宏清贺飞赵山岑	中科院遗传与发育生物学研究所深圳华大基因研究院
245	Weilong Guo, et al. Origin and adaptation to high altitude of Tibetan semi-wild wheat. Nature Communications, 2020, 11(1):5085.	孙其信倪中福彭惠茹	中国农业大学
172	Yao Zhou, et al. Triticum population sequencing provides insights into wheat adaptation. Nature Genetics, 2020, 52(12):1412-1422.	鲁非焦雨铃	中国科学院遗传与发育生物学研究所
145	Chenyang Hao, et al. Resequencing of 145 Landmark Cultivars Reveals Asymmetric Sub-genome Selection and Strong Founder Genotype Effects on Wheat Breeding in China. Molecular Plant, 2020, 7;13(12):1733-1751.	张学勇路洪凤	中国农业科学院作物科学研究所
63	Hong Cheng, et al. Frequent intra- and inter-species introgression shapes the landscape of genetic variation in bread wheat. Genome Biology, 2019, 20(1):136.	姜雨孙其信宋卫宁	西北农林科技大学
26	Zhengzhao Yang, et al. ggComp enables dissection of germplasm resources and construction of a multiscale germplasm network in wheat. Plant Physiology. 2022, 28;188(4):1950-1965.	郭伟龙	中国农业大学
15	Sean Walkowiak, et al. Multiple wheat genomes reveal global variation in modern breeding. Nature, 2020, 588, 277-283.	Curt A. McCartney Manuel Spannagl Thomas Wicker Curtis J. Pozniak	University of Saskatchewan
10	Jing Liu, et al. Ectopic expression of VRT-A2 underlies the origin of Triticum polonicum and Triticum petropavlovskyi with long outer glumes and grains. Molecular Plant, 2021, 14(9), 1472-1488.	倪中福刘杰	中国农业大学
1	Yan Dong, et al. Fine mapping of QPm.caas-3BS, a stable QTL for adult-plant resistance to powdery mildew in wheat (Triticum aestivum L.). Theor Appl Genet, 135, 1083-1099 (2022).	夏先春	中国农业科学院作物科学研究所黑龙江省农业科学院克山分院
4	Unpublished	Unpublished	中国农业科学院作物科学研究所山东省农业科学院作物研究所

引用说明

1. 关于本数据集

对于使用到的每个材料，可以通过“数据信息”页面查询到来源文章（见上表）。

2. 关于SnpHub

SnpHub是一个用于检索、分析和可视化基因组变异数据的、基于Shiny的服务器框架。

引用格式：
Wenxi Wang, Zihao Wang, Xintong Li, Zhongfu Ni, Zhaorong Hu, Mingming Xin, Huiru Peng, Yingyin Yao, Qixin Sun, Weilong Guo. (2020). SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat. GigaScience, 9(6), giaa060. https://doi.org/10.1093/gigascience/giaa060