TriticeaeGeneTribe - A homology database for Triticeae tribe (wheat, durum wheat, barley, and their relatives)

1. Select assembly

2. Enter gene list

Or upload file

Browse...

3. Select task

1-to-1 1-to-many

Min match score

4. Search to following assemblies

Download results as CSV

1. Build Phylogenetic Tree based on gene list

2. Tree settings

Separate genes into different homologous groups

Real branch length

Show genes structure

3.

Build tree...

4. Output:

View homologous group

Multiple Sequence Alignment (MSA):

Phylogenetic tree:

Download:

Protein sequences

Show genes ID

1. Select assembly

2. Enter gene list

Or upload file

Browse...

3. 4. Download results as CSV

1. Select species

Oryza sativa Japonica (IRGSP 1.0)

Zea mays (B73 RefGen v4)

Arabidopsis thaliana (TAIR10)

Triticum aestivum (IWGSC RefSeqv1.1)

2. Enter keyword

Precise search

Case-sensitive

3. Search to following assembly

4. 5. Download results as CSV

1. Select first assembly

2. Enter a gene

3. Number of neighboring genes

4. Select second assembly

5. Select second gene

6. Plot options (optional)

one-to-many

Distinguish scores

1. Select first assembly

Select chromosomes of first assembly

2 Select second assembly

Select chromosomes of second assembly

3. Mark region? (optional)

3.1 Enter a gene

Number of neighboring genes

3.2. Or genomic region
Example:chr1A:20000000-23000000

4. one-to-its-best block

Yes No

5.

1. Select first assembly

2. Select other assemblies

3.1. Enter a gene

Number of neighboring genes

3.2. Or genomic region (optional)

4. Plot options (optional)

one-to-many

Distinguish scores

Real gene spacing

LC gene

Phylogenetic tree

Gene ID

Gene length

Inter-genic distance

1. Select species

2. Select task

Single sample analysis

Multiple samples analysis

Enter foreground gene list

Or upload file

Browse...

Upload a file containing foreground genes Example

Browse...

3. Enter customized background genes (optional)

Browse...

4. Parameter control (optional)

Significance value

Multi-test adjustment

Min size of genes in background

Max size of genes in background

Download results as CSV

1. Select assembly

2. Enter gene list example

Or upload file

3. Select task

Min match score

4. Search to following assemblies

1. Build Phylogenetic Tree based on gene list

2. Tree settings

3. GO

4. Output:

View homologous group

Multiple Sequence Alignment (MSA): View

Visualization of Multiple Sequence Alignment

Phylogenetic tree

Multiple Sequence Alignment

Phylogenetic tree:

Download:

1. Select assembly

2. Enter gene list example

Or upload file

3. GO

4. Download results as CSV

1. Select species

2. Enter keyword example

3. Search to following assembly

4. GO

5. Download results as CSV

1. Select first assembly

2. Enter a gene example

3. Number of neighboring genes

4. Select second assembly

5. Select second gene

6. Plot options (optional)

1. Select first assembly example

2 Select second assembly

3. Mark region? (optional)

3.1 Enter a gene

Number of neighboring genes

3.2. Or genomic region Example:chr1A:20000000-23000000

4. one-to-its-best block

5. GO Download image

1. Select first assembly

2. Select other assemblies

Select genomes

3.1. Enter a gene example

Number of neighboring genes

3.2. Or genomic region (optional)

4. Plot options (optional)

1. Select species

2. Select task

Enter foreground gene list example

Or upload file

Upload a file containing foreground genes Example

3. Enter customized background genes (optional)

4. Parameter control (optional)

Significance value

Multi-test adjustment

Min size of genes in background

Max size of genes in background

5. Use orthologs (optional)

Select group

The number of most-enriched terms to be displayed

2. Enter gene list

3.

Multiple Sequence Alignment (MSA):

2. Enter gene list

3.

2. Enter keyword

4.

2. Enter a gene

1. Select first assembly

3.2. Or genomic region
Example:chr1A:20000000-23000000

5.

3.1. Enter a gene

Enter foreground gene list