RESOURSES

Database

Wheat-SnpHub-Portal

Genomic variation datasets of wheat and its progenitors
(GigaScience, 2020)

WheatUnion

Wheat Resequencing Variants joint database
(2020, Collaboration)

WheatCompDB

Genetic Relationship Information Database for Wheat Germplasms
(Plant Physiology, 2022)

Triticeae-GeneTribe

Connect Emerging Assemblies in Triticeae by Genes
(Molecular Plant, 2020)

wGRN

A platform using wheat integrative regulatory networks to guide functional gene discovery
(Molecular Plant, 2023)

wLNCdb

Wheat long non-coding RNA (lncRNA) database
(Seed Biology, 2023)

pNOGmap

A database for nucleus organellar genes in Poaceae
(Plant Physiology, 2023)

WheatCNVb

A database for CNV block profiling and variety comparison

Software

SnpHub

An easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat
(GigaScience, 2020)

ggComp

A pairwised comparison method to identify similar genetic regions and shared CNV regions
(Plant Physiology, 2020)

IntroBlocker

Semi-supervised algorithm for ancestral genomic blocks dissection
(Nature Communications, 2022)

GeneTribe

A tool for performing collinearity-incorporating homology inference
(Molecular Plant, 2020)

IGTminer

A tool for identifying the evolutionary trajectories of nuclear organellar genes
(Plant Physiology, 2023)

PanSK

K-mer based approach for identifying PAV and haployptes of wheat SSP genes at pangenome level

Dataset

The Tibetan wheat sequencing project

Zang1817 genome assembly and Whole genome resequencing
(Nature Communications, 2020)

Grain Translatome Browser

A browser for analyzing the translatomic data of developing wheat grains
(Plant cell, 2023)

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